Basic Information
Locus ID:
gene.Cymno01g12920
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Transcription initiation factor IIF subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 26883808 | 26892200 | + | gene.Cymno01g12920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.01 | 58,674.31 Da | 45.62 | 62.74 | -0.95 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05793 | Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) | 48 | 531 | 4.1E-115 | IPR008851 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 464 | 531 | 2.04E-13 | IPR036390 |
| SUPERFAMILY | SSF50916 | Rap30/74 interaction domains | 53 | 183 | 2.88E-33 | IPR011039 |
| Gene3D | G3DSA:1.10.10.10 | - | 453 | 531 | 4.2E-15 | IPR036388 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 436 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 267 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 371 | 388 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 303 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 355 | 370 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 471 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 337 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 437 | 466 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12610.1 | transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors. | 0 |
| RefSeq | XP_030973075.1 | transcription initiation factor IIF subunit alpha isoform X1 [Quercus lobata] | 0 |
| Q9SU25 | Transcription initiation factor IIF subunit alpha OS=Arabidopsis thaliana OX=3702 GN=RAP74 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PQ13 | Transcription initiation factor IIF subunit alpha OS=Zostera marina OX=29655 GN=ZOSMA_187G00090 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21825 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21976 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah017388 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25869, Sbi_jg9715 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18951 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00023853 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41694, Sgl46494 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008932, gene:ENSEOMG00000031564 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0000970, CQ.Regalona.r1.8BG0000850 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30067680 |
| Apiaceae | Apium graveolens | 1 | Ag5G00552 |
| Arecaceae | Cocos nucifera | 1 | scaffold033573G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103722388 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.3077.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G26828 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G12610.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028564m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g04900.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB08g037550.2N, BniB08g048570.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G2085 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2285 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g12920, gene.Cymno06g02400 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g16700 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7732 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.725 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00006027, Pov_00011997 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G23008 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.4323, BH01.4649, CH01.2976, CH01.4943, Contig775.3 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0120590, gene-QOZ80_2BG0175170 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0036480.1, HORVU.MOREX.r3.4HG0391440.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_010883, gene-QYE76_069279 |
| Poaceae | Oryza coarctata | 4 | Oco05G008340, Oco06G008620, Oco19G001560, Oco20G001770 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g14720.1, LOC_Os10g10990.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G416300, gene-BS78_K109600 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0102065, Pt_Chr0102086, Pt_Chr0501270 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G029660, Chr06G021660, Chr12G009870, Chr15G017240 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G259000, Tel4E01G386700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG020750, gene_TRIDC1BG024930 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G138600.1, TraesCS1B02G153600.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb224360_P001, Zm00001eb398520_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-27601 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g15890, Zma_g4015 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2422, evm.TU.LG17.1467 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g24020 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1498 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19986, nbisL1-mrna-20310 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17692 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13436 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.183 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012111 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14928 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12181 |
| Salicaceae | Populus euphratica | 1 | populus_peu26459 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613971 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002833 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_2685, gene_446 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0175 |
| Zosteraceae | Zostera marina | 2 | Zosma02g02720.v3.1, Zosma03g18310.v3.1 |