halophFGD

Basic Information

Locus ID: gene.Cymno01g12730

Species & Taxonomic ID: Cymodocea nodosa & 55448

Genome Assembly: GCA_036874045.1

Description: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr01	26796090	26806365	+	gene.Cymno01g12730

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.06	35,970.19 Da	50.72	100.82	0.02

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_026664897.2	RNA-binding protein 1-like isoform X2 [Phoenix dactylifera]	0
TrEMBL	A0A8B8JAS8	RNA-binding protein 1-like isoform X2 OS=Phoenix dactylifera OX=42345 GN=LOC103718657 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg10275, jg13851, jg2158, jg4587
Aizoaceae	Mesembryanthemum crystallinum	3	gene_13150, gene_3336, gene_999
Amaranthaceae	Atriplex hortensis	3	Ah005333, Ah018564, Ah024364
Amaranthaceae	Beta vulgaris	3	BVRB_1g011240, BVRB_3g051310, BVRB_4g080290
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg15012, Sbi_jg17551, Sbi_jg38919, Sbi_jg54199 ... Sbi_jg55833, Sbi_jg62199
Amaranthaceae	Salicornia europaea	3	Seu_jg10782, Seu_jg26333, Seu_jg800
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00007429, GOSA_00017803, GOSA_00021044
Amaranthaceae	Suaeda glauca	8	Sgl01269, Sgl06353, Sgl10170, Sgl15278, Sgl15319, Sgl15373 ... Sgl24130, Sgl29313
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000003277, gene:ENSEOMG00000007929 ... gene:ENSEOMG00000012665, gene:ENSEOMG00000029256, gene:ENSEOMG00000029591, gene:ENSEOMG00000033393, gene:ENSEOMG00000041872, gene:ENSEOMG00000045308, gene:ENSEOMG00000049533
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.1AG0014220, CQ.Regalona.r1.1BG0011830 ... CQ.Regalona.r1.3AG0005650, CQ.Regalona.r1.3BG0005750, CQ.Regalona.r1.4AG0004360, CQ.Regalona.r1.4BG0004490
Anacardiaceae	Pistacia vera	3	pistato.v30038060, pistato.v30165310, pistato.v30261260
Apiaceae	Apium graveolens	4	Ag10G02498, Ag3G01128, Ag4G02635, Ag9G02592
Arecaceae	Cocos nucifera	4	COCNU_02G000950, COCNU_07G006760, COCNU_08G006600 ... COCNU_10G004940
Arecaceae	Phoenix dactylifera	5	gene-LOC103707719, gene-LOC103709601, gene-LOC103716719 ... gene-LOC103718657, gene-LOC113463554
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.756.V1.1, AsparagusV1_08.418.V1.1 ... AsparagusV1_08.532.V1.1
Asteraceae	Flaveria trinervia	4	Ftri16G31281, Ftri4G20935, Ftri8G16409, Ftri8G28906
Brassicaceae	Arabidopsis thaliana	2	AT1G21320.1, AT1G76940.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10008603m.g.v1.0, Thhalv10019060m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g18870.v2.2, Sp5g32060.v2.2
Brassicaceae	Brassica nigra	6	BniB03g009090.2N, BniB03g009110.2N, BniB03g009140.2N ... BniB03g029590.2N, BniB03g056020.2N, BniB04g035900.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G1956, Ceq03G1957
Casuarinaceae	Casuarina glauca	3	Cgl03G2102, Cgl03G2104, Cgl09G1785
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno01g12730, gene.Cymno06g02540, gene.Cymno09g02230 ... gene.Cymno11g08950
Dunaliellaceae	Dunaliella salina	1	Dusal.0053s00027.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate05g01860, gene.Thate06g15790, gene.Thate08g17870
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG05.1213, evm.TU.LG06.730, evm.TU.LG07.657
Plantaginaceae	Plantago ovata	3	Pov_00013457, Pov_00022997, Pov_00041184
Plumbaginaceae	Limonium bicolor	2	Lb2G12756, Lb3G21045
Poaceae	Echinochloa crus-galli	11	AH06.246, AH06.470, AH08.2287, BH06.148, BH06.162, BH06.351 ... BH08.2428, CH06.143, CH06.342, CH08.2626, CH08.2627
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_6AG0506880, gene-QOZ80_6AG0508760 ... gene-QOZ80_6AG0528800, gene-QOZ80_6BG0458560, gene-QOZ80_6BG0460920, gene-QOZ80_8AG0639740, gene-QOZ80_8BG0668350
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.7HG0642770.1, HORVU.MOREX.r3.7HG0650310.1 ... HORVU.MOREX.r3.7HG0687080.2
Poaceae	Lolium multiflorum	4	gene-QYE76_027559, gene-QYE76_027870, gene-QYE76_030513 ... gene-QYE76_030528
Poaceae	Oryza coarctata	8	Oco11G002260, Oco12G001130, Oco12G002250, Oco15G014040 ... Oco16G013230, Oco17G009960, Oco18G009960, Oco18G009980
Poaceae	Oryza sativa	5	LOC_Os06g03690.2, LOC_Os06g05530.1, LOC_Os08g43360.1 ... LOC_Os09g35830.4, LOC_Os09g35850.1
Poaceae	Paspalum vaginatum	3	gene-BS78_07G217800, gene-BS78_10G019600 ... gene-BS78_10G041500
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0401910, Pt_Chr0401931, Pt_Chr0402216, Pt_Chr0403459 ... Pt_Chr0403476
Poaceae	Sporobolus alterniflorus	9	Chr0G015670, Chr11G022980, Chr11G024080, Chr14G001760 ... Chr16G018710, Chr17G017740, Chr20G002680, Chr21G000880, Chr29G000830
Poaceae	Thinopyrum elongatum	3	Tel7E01G124800, Tel7E01G199600, Tel7E01G472700
Poaceae	Triticum dicoccoides	6	gene_TRIDC4AG057500, gene_TRIDC4AG063820 ... gene_TRIDC7AG006100, gene_TRIDC7AG011410, gene_TRIDC7AG035480, gene_TRIDC7BG026620
Poaceae	Triticum aestivum	9	TraesCS4A02G396800.2, TraesCS4A02G432400.2 ... TraesCS7A02G057900.1, TraesCS7A02G096900.1, TraesCS7A02G270300.1, TraesCS7B02G168600.1, TraesCS7D02G053000.1, TraesCS7D02G093000.1, TraesCS7D02G270800.1
Poaceae	Zea mays	2	Zm00001eb202590_P001, Zm00001eb378600_P001
Poaceae	Zoysia japonica	4	nbis-gene-17594, nbis-gene-40401, nbis-gene-42802 ... nbis-gene-51176
Poaceae	Zoysia macrostachya	4	Zma_g23382, Zma_g24483, Zma_g29103, Zma_g31264
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.1590, evm.TU.LG01.498, evm.TU.LG04.1383 ... evm.TU.LG04.262, evm.TU.LG05.1904, evm.TU.LG14.838
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g23730, gene.Posoc06g11200, gene.Posoc08g01580
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_2_RagTag.1627, evm.TU.Scaffold_7_RagTag.1213 ... evm.TU.Scaffold_8_RagTag.546
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-18623, nbisL1-mrna-25879, nbisL1-mrna-3585 ... nbisL1-mrna-9715
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-1088, nbisL1-mrna-11280, nbisL1-mrna-13023
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-13189, nbisL1-mrna-19014
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000002l.369, evm.TU.utg000008l.713 ... evm.TU.utg000009l.329, evm.TU.utg000018l.647
Rhizophoraceae	Kandelia obovata	3	Maker00002909, Maker00005740, Maker00011790
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-2759, nbisL1-mrna-8933, nbisL1-mrna-9641
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-18417, nbisL1-mrna-18632, nbisL1-mrna-21783
Salicaceae	Populus euphratica	5	populus_peu12617, populus_peu27985, populus_peu29433 ... populus_peu32536, populus_peu37057
Solanaceae	Lycium barbarum	3	gene-LOC132627289, gene-LOC132632124, gene-LOC132639733
Solanaceae	Solanum chilense	4	SOLCI003147000, SOLCI003530900, SOLCI003531000 ... SOLCI005051100
Solanaceae	Solanum pennellii	10	gene-LOC107012415, gene-LOC107015693, gene-LOC107016977 ... gene-LOC107021897, gene-LOC107021898, gene-LOC107021899, gene-LOC107021901, gene-LOC107022889, gene-LOC107023787, gene-LOC114073857
Tamaricaceae	Reaumuria soongarica	4	STRG.8119_chr05_-, STRG.8149_chr05_+, gene_10768, gene_5058
Tamaricaceae	Tamarix chinensis	3	TC06G2670, TC08G1317, TC11G1401
Zosteraceae	Zostera marina	2	Zosma05g24870.v3.1, Zosma05g33850.v3.1