Basic Information
Locus ID:
gene.Cymno01g12700
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Universal stress protein family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 26790001 | 26793535 | + | gene.Cymno01g12700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.13 | 77,687.21 Da | 43.06 | 82.49 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 12 | 151 | 7.95473E-46 | - |
| CDD | cd14066 | STKc_IRAK | 430 | 690 | 7.56184E-86 | - |
| Pfam | PF00582 | Universal stress protein family | 15 | 140 | 1.2E-5 | IPR006016 |
| Pfam | PF00069 | Protein kinase domain | 428 | 678 | 7.6E-40 | IPR000719 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 15 | 140 | 1.09E-7 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 407 | 680 | 1.07E-68 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 402 | 496 | 3.2E-24 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 14 | 148 | 9.7E-9 | IPR014729 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 497 | 695 | 4.3E-50 | - |
| SMART | SM00220 | serkin_6 | 424 | 687 | 1.2E-26 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 424 | 687 | 34.901806 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 542 | 554 | - | IPR008271 |
| Coils | Coil | Coil | 376 | 405 | - | - |
| Coils | Coil | Coil | 290 | 310 | - | - |
| Coils | Coil | Coil | 336 | 356 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G12000.1 | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain. | 0 |
| RefSeq | XP_019706942.2 | U-box domain-containing protein 52 [Elaeis guineensis] | 0 |
| Q9FKG6 | U-box domain-containing protein 52 OS=Arabidopsis thaliana OX=3702 GN=PUB52 PE=2 SV=1 | 0 | |
| TrEMBL | A0A843VJ39 | Protein kinase domain-containing protein OS=Colocasia esculenta OX=4460 GN=Taro_027092 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology