Basic Information
Locus ID:
gene.Cymno01g09210
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 23927975 | 23930657 | + | gene.Cymno01g09210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.05 | 26,631.22 Da | 70.59 | 82.36 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 188 | 227 | 3.53684E-8 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 186 | 234 | 1.3E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 178 | 235 | 2.99E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 157 | 238 | 7.8E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 188 | 227 | 2.1E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 188 | 228 | 11.176261 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24204.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_009390844.1 | PREDICTED: uncharacterized protein LOC103977137 isoform X3 [Musa acuminata subsp. malaccensis] | 0 |
| TrEMBL | A0A4S8J9B8 | RING-type domain-containing protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb03t01980 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg17385, jg39978, jg39979 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027594 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g127600 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13100, Sbi_jg52750 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9094 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010158 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000002924, gene:ENSEOMG00000027849 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6AG0025660 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30043410, pistato.v30205520 |
| Apiaceae | Apium graveolens | 1 | Ag9G01310 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G017150 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103700820 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.2148.V1.1 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G24204.3 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027110m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g22180.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g081040.2N, BniB05g013010.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G2172, Ceq05G1381 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G2315, Cgl05G1383 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g09210 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0354s00010.v1.0 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10548, nbisL1-mrna-5205 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.376 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023835 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G05545, Lb7G33242, Lb7G33245 |
| Poaceae | Oryza coarctata | 2 | Oco11G006640, Oco12G006750 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g14200.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G107200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0404542, Pt_Chr0404566 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.115, evm.TU.LG25.1219 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g16600, gene.Posoc03g16610 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.1226, evm.TU.Scaffold_7_RagTag.791 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19229, nbisL1-mrna-742 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10000 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6632 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.618 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010433 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8278 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10050 |
| Salicaceae | Populus euphratica | 1 | populus_peu38159 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132602530, gene-LOC132623566 |
| Solanaceae | Solanum chilense | 1 | SOLCI006540200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009104 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.4282_chr03_+, gene_1037 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G1822, TC04G2598 |