Basic Information
Locus ID:
gene.Cymno01g08540
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 23308780 | 23311504 | - | gene.Cymno01g08540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 30,656.62 Da | 53.91 | 87.92 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 75 | 123 | 3.09138E-18 | - |
| Pfam | PF12906 | RING-variant domain | 75 | 122 | 5.3E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 72 | 126 | 1.5E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 59 | 134 | 2.4E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 74 | 123 | 5.7E-15 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 67 | 129 | 19.965374 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50440.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_021808710.1 | E3 ubiquitin-protein ligase MARCH2 [Prunus avium] | 0 |
| TrEMBL | A0A7I8LC91 | RING-CH-type domain-containing protein OS=Spirodela intermedia OX=51605 GN=SI8410_13018100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology