Basic Information
Locus ID:
gene.Cymno01g07870
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 22602703 | 22606317 | - | gene.Cymno01g07870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 52,360.63 Da | 71.49 | 78.57 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 242 | 285 | 1.1895E-17 | - |
| Pfam | PF13639 | Ring finger domain | 242 | 285 | 1.2E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 237 | 290 | 1.26E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 217 | 292 | 4.2E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 243 | 284 | 2.9E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 243 | 285 | 12.326995 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 166 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 338 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 155 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05810.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010929293.1 | RING-H2 finger protein ATL43 [Elaeis guineensis] | 0 |
| Q5EAE9 | RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2 | 0 | |
| TrEMBL | A0A251QTN3 | RING-type domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_1G069300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology