Basic Information
Locus ID:
gene.Cymno01g07660
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 22288984 | 22297217 | - | gene.Cymno01g07660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 110,807.15 Da | 52.30 | 69.16 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 177 | 482 | 1.25058E-152 | - |
| Pfam | PF01753 | MYND finger | 94 | 131 | 3.5E-9 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 178 | 481 | 4.6E-42 | IPR001394 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 92 | 133 | 2.96E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 175 | 500 | 6.87E-86 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 172 | 492 | 6.9E-89 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 87 | 136 | 3.6E-13 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 178 | 484 | 48.357483 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 94 | 131 | 11.991562 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 94 | 131 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 179 | 194 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 912 | 946 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31670.1 | ubiquitin-specific protease 18. | 0 |
| RefSeq | XP_008789702.2 | ubiquitin carboxyl-terminal hydrolase 18-like isoform X2 [Phoenix dactylifera] | 0 |
| Q67XW5 | Ubiquitin carboxyl-terminal hydrolase 18 OS=Arabidopsis thaliana OX=3702 GN=UBP18 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9PM34 | Ubiquitin carboxyl-terminal hydrolase 18-like OS=Zostera marina OX=29655 GN=ZOSMA_218G00140 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology