Basic Information
Locus ID:
gene.Cymno01g07090
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Ubiquitin fusion degradation protein 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 21252809 | 21257546 | + | gene.Cymno01g07090 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 35,419.74 Da | 48.65 | 67.62 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 14 | 185 | 2.9E-79 | IPR004854 |
| Gene3D | G3DSA:3.10.330.10 | - | 110 | 183 | 1.6E-34 | - |
| Gene3D | G3DSA:2.40.40.50 | - | 7 | 109 | 3.3E-44 | IPR042299 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 319 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 286 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_010940943.1 | ubiquitin fusion degradation protein 1 homolog [Elaeis guineensis] | 0 |
| P70362 | Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Mus musculus OX=10090 GN=Ufd1 PE=1 SV=2 | 0 | |
| TrEMBL | B3TLZ5 | Ubiquitin fusion degradation protein OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105059367 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology