Basic Information
Locus ID:
gene.Cymno01g06320
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Ccr4-associated factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 14469629 | 14470471 | - | gene.Cymno01g06320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.85 | 31,308.16 Da | 29.39 | 87.79 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 23 | 146 | 1.7E-9 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 169 | 252 | 8.4E-7 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 20 | 274 | 2.63E-91 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 8 | 277 | 3.2E-101 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32070.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_042480429.1 | probable CCR4-associated factor 1 homolog 7 [Macadamia integrifolia] | 0 |
| Q9SKZ2 | Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9NRA5 | poly(A)-specific ribonuclease OS=Zostera marina OX=29655 GN=ZOSMA_69G00100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology