Basic Information
Locus ID:
gene.Cymno01g05150
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Leucine Rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 4782515 | 4785708 | - | gene.Cymno01g05150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 67,848.94 Da | 40.20 | 112.56 | 0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 401 | 422 | 8.4E-4 | IPR001611 |
| Pfam | PF12937 | F-box-like | 17 | 52 | 3.9E-6 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 425 | 445 | 0.15 | IPR001611 |
| SUPERFAMILY | SSF81383 | F-box domain | 16 | 53 | 1.44E-9 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 44 | 178 | 6.28E-5 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 342 | 575 | 1.05E-27 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 16 | 52 | 6.4E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 53 | 474 | 3.3E-38 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 475 | 577 | 5.0E-9 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 537 | 562 | 270.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 505 | 530 | 0.0011 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 399 | 424 | 0.013 | IPR006553 |
| SMART | SM00256 | fbox_2 | 20 | 60 | 0.0066 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 425 | 448 | 57.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 348 | 373 | 48.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 322 | 347 | 91.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 479 | 504 | 50.0 | IPR006553 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 14 | 61 | 11.140122 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55590.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_017699493.2 | F-box protein At-B isoform X1 [Phoenix dactylifera] | 0 |
| Q9ZWC6 | F-box protein At-B OS=Arabidopsis thaliana OX=3702 GN=ATB PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7MUX1 | F-box protein At-B isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103711993 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg24668, jg854 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21929 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009612 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g213390 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12290, Sbi_jg47273 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21541 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018842 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55519, Sgl60738 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017151, gene:ENSEOMG00000037998 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0002410, CQ.Regalona.r1.9AG0022260 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30151010, pistato.v30151060, pistato.v30277580 |
| Apiaceae | Apium graveolens | 2 | Ag2G01348, Ag6G02381 |
| Arecaceae | Cocos nucifera | 2 | COCNU_11G006520, scaffold023760G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696458, gene-LOC103711993 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.504.V1.1, AsparagusV1_04.2356.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G09473, Ftri15G13747 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G55590.1, AT2G17020.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011328m.g.v1.0, Thhalv10022585m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g41210.v2.2, Sp3g30310.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g026470.2N, BniB04g053880.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G1582, Ceq07G1777 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1746, Cgl07G1924 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g05150, gene.Cymno02g10660 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g09020, gene.Thate08g04950 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.2134, evm.TU.LG08.360 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00001726, Pov_00038034 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb3G17288, Lb3G17289, Lb3G17293 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.5222, AH08.1958, BH01.4988, BH08.2058, CH01.5592 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0232800, gene-QOZ80_3BG0295160 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0409150.1, HORVU.MOREX.r3.7HG0678220.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_029853, gene-QYE76_071078 |
| Poaceae | Oryza coarctata | 4 | Oco05G002180, Oco06G002140, Oco15G011660, Oco16G010910 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g04270.1, LOC_Os08g39060.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G490300, gene-BS78_07G179000 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0100359, Pt_Chr0100441, Pt_Chr0404027 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G037900, Chr01G038020, Chr07G006430, Chr12G001520 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G543400, Tel7E01G426900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4BG055520, gene_TRIDC5AG071590 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4B02G331300.2, TraesCS4D02G328200.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb199550_P002, Zm00001eb402660_P003 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-15229, nbis-gene-17361, nbis-gene-3000 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g2131, Zma_g24314, Zma_g29124, Zma_g367 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.1779, evm.TU.LG09.154 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g03480, gene.Posoc03g09780 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.2353, evm.TU.Scaffold_1_RagTag.2354 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-5213 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7908 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3217 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.39 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017039 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4596 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22490 |
| Salicaceae | Populus euphratica | 3 | populus_peu08659, populus_peu17079, populus_peu36693 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132599361, gene-LOC132618602 |
| Solanaceae | Solanum chilense | 2 | SOLCI000015500, SOLCI004292800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007755, gene-LOC107024198 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.11746_chr02_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0178 |
| Zosteraceae | Zostera marina | 2 | Zosma03g14410.v3.1, Zosma06g26760.v3.1 |