Basic Information
Locus ID:
gene.Cymno01g03580
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 2830144 | 2837433 | + | gene.Cymno01g03580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.84 | 65,921.86 Da | 52.25 | 77.89 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 245 | 288 | 3.24474E-19 | - |
| Pfam | PF13639 | Ring finger domain | 245 | 288 | 5.4E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 225 | 294 | 1.24E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 221 | 292 | 2.1E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 246 | 287 | 3.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 246 | 288 | 12.238477 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_009391745.1 | PREDICTED: RING-H2 finger protein ATL46-like [Musa acuminata subsp. malaccensis] | 0 |
| Q9FL07 | RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1 | 0 | |
| TrEMBL | A0A843W1H7 | RING-type domain-containing protein OS=Colocasia esculenta OX=4460 GN=Taro_036409 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology