Basic Information
Locus ID:
gene.Cymno01g02730
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 2081183 | 2086182 | - | gene.Cymno01g02730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.02 | 60,098.22 Da | 40.77 | 79.53 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 435 | 497 | 4.24047E-16 | IPR002048 |
| CDD | cd05117 | STKc_CAMK | 57 | 315 | 1.04255E-139 | - |
| Pfam | PF13499 | EF-hand domain pair | 434 | 497 | 1.8E-14 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 58 | 316 | 8.1E-76 | IPR000719 |
| Pfam | PF13833 | EF-hand domain pair | 376 | 423 | 2.3E-8 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 345 | 523 | 3.15E-43 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 46 | 346 | 3.91E-87 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 60 | 143 | 3.4E-28 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 144 | 324 | 2.5E-59 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 325 | 500 | 2.5E-51 | - |
| SMART | SM00054 | efh_1 | 435 | 463 | 0.0059 | IPR002048 |
| SMART | SM00054 | efh_1 | 399 | 427 | 0.31 | IPR002048 |
| SMART | SM00054 | efh_1 | 471 | 499 | 2.1E-5 | IPR002048 |
| SMART | SM00220 | serkin_6 | 58 | 316 | 2.2E-100 | IPR000719 |
| SMART | SM00054 | efh_1 | 363 | 391 | 0.028 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 58 | 316 | 49.092342 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 395 | 430 | 9.408546 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 359 | 394 | 12.700205 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 431 | 466 | 12.42125 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 467 | 502 | 13.676544 | IPR002048 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 64 | 87 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 408 | 420 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 480 | 492 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 178 | 190 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 444 | 456 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19450.1 | calcium-dependent protein kinase 19. calcium-dependent protein kinase (CDPK19) mRNA, complete | 0 |
| RefSeq | XP_039114830.1 | calcium-dependent protein kinase 20-like [Dioscorea cayenensis subsp. rotundata] | 0 |
| Q84SL0 | Calcium-dependent protein kinase 20 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK20 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6I9RC38 | calcium-dependent protein kinase 20 isoform X1 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105046526 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology