Basic Information
Locus ID:
gene.Cymno01g02400
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Belongs to the glycosyl hydrolase 17 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 1905130 | 1915856 | - | gene.Cymno01g02400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 62,353.01 Da | 37.81 | 91.95 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 121 | 442 | 7.9E-70 | IPR000490 |
| Pfam | PF07983 | X8 domain | 459 | 528 | 5.0E-12 | IPR012946 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 121 | 442 | 1.45E-76 | IPR017853 |
| Gene3D | G3DSA:1.20.58.1040 | - | 455 | 552 | 2.4E-5 | - |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 120 | 447 | 7.8E-108 | - |
| SMART | SM00768 | X8_cls | 458 | 542 | 3.6E-31 | IPR012946 |
| ProSitePatterns | PS00587 | Glycosyl hydrolases family 17 signature. | 355 | 368 | - | IPR000490 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13560.1 | O-Glycosyl hydrolases family 17 protein. | 0 |
| RefSeq | XP_009406531.1 | PREDICTED: glucan endo-1,3-beta-glucosidase 4-like isoform X2 [Musa acuminata subsp. malaccensis] | 0 |
| Q94CD8 | Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana OX=3702 GN=At3g13560 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1D1Y735 | Glucan endo-1,3-beta-glucosidase 4 OS=Anthurium amnicola OX=1678845 GN=At3g13560_6 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology