Basic Information
Locus ID:
gene.Cymno01g01280
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Short Name:
IAA16
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 1025090 | 1026817 | - | gene.Cymno01g01280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.89 | 27,013.76 Da | 40.12 | 61.97 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 18 | 240 | 3.4E-84 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 127 | 230 | 5.2E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 128 | 243 | 2.0E-44 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 132 | 231 | 25.091913 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04730.1 | indoleacetic acid-induced protein 16. early auxin-induced (IAA16) | 0 |
| RefSeq | XP_008810170.2 | auxin-responsive protein IAA30 [Phoenix dactylifera] | 0 |
| O24407 | Auxin-responsive protein IAA16 OS=Arabidopsis thaliana OX=3702 GN=IAA16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9Q082 | Auxin-responsive protein OS=Zostera marina OX=29655 GN=ZOSMA_13G00690 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology