Basic Information
Locus ID:
gene.Cymno01g00260
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 243329 | 259047 | + | gene.Cymno01g00260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 131,569.13 Da | 45.33 | 78.09 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 199 | 527 | 3.82476E-168 | - |
| CDD | cd00121 | MATH | 58 | 182 | 6.4117E-37 | IPR002083 |
| Pfam | PF00917 | MATH domain | 63 | 183 | 4.5E-19 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 201 | 522 | 2.0E-47 | IPR001394 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 626 | 878 | 1.6E-76 | IPR024729 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 888 | 1099 | 4.2E-57 | IPR029346 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 196 | 554 | 6.48E-98 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 55 | 188 | 2.62E-38 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 198 | 526 | 3.8E-90 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 687 | 803 | 8.1E-45 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 804 | 901 | 1.2E-27 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 54 | 197 | 1.2E-50 | IPR008974 |
| SMART | SM00061 | math_3 | 58 | 162 | 8.8E-19 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 201 | 525 | 40.661179 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 56 | 181 | 36.729851 | IPR002083 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 202 | 217 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 441 | 458 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| Coils | Coil | Coil | 538 | 565 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_038985459.1 | ubiquitin carboxyl-terminal hydrolase 12 isoform X2 [Phoenix dactylifera] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8B9AQ63 | ubiquitinyl hydrolase 1 OS=Phoenix dactylifera OX=42345 GN=LOC103707271 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology