Basic Information
Locus ID:
gene.Cymno01g00060
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 98530 | 111986 | + | gene.Cymno01g00060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 104,883.26 Da | 45.98 | 82.09 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 732 | 915 | 2.55845E-54 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 319 | 914 | 1.2E-82 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 317 | 917 | 4.63E-106 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 708 | 923 | 2.0E-57 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 309 | 549 | 4.8E-65 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 319 | 917 | 55.696156 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 859 | 876 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 320 | 335 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_020266514.1 | ubiquitin carboxyl-terminal hydrolase 8 [Asparagus officinalis] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9NMX9 | Ubiquitin carboxyl-terminal hydrolase OS=Zostera marina OX=29655 GN=ZOSMA_87G00970 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology