Basic Information
Locus ID:
gene-QYE76_071881
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 432440842 | 432444912 | - | gene-QYE76_071881 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.18 | 35,405.95 Da | 39.56 | 86.76 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 230 | 299 | 6.5E-21 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 156 | 220 | 2.7E-14 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 32 | 100 | 8.6E-25 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 111 | 145 | 3.2E-7 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 224 | 299 | 2.12E-22 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 109 | 146 | 5.3E-7 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 152 | 225 | 1.68E-16 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 27 | 101 | 1.29E-25 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 151 | 224 | 2.0E-19 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 225 | 307 | 1.2E-28 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 110 | 150 | 5.1E-9 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 22 | 109 | 2.0E-34 | - |
| SMART | SM00213 | ubq_7 | 30 | 101 | 2.0E-22 | IPR000626 |
| SMART | SM00213 | ubq_7 | 153 | 221 | 7.5E-10 | IPR000626 |
| SMART | SM00213 | ubq_7 | 227 | 297 | 1.3E-22 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 153 | 225 | 17.386866 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 30 | 101 | 21.241112 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 115 | 145 | 10.876022 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 227 | 301 | 21.850822 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 40 | 60 | 8.4E-23 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 82 | 103 | 8.4E-23 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 61 | 81 | 8.4E-23 | IPR019956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.3 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 0 |
| RefSeq | XP_047083208.1 | polyubiquitin-like [Lolium rigidum] | 0 |
| P0CH27 | Ubiquitin-ribosomal protein eL40 fusion protein OS=Trypanosoma cruzi OX=5693 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2N9ISH4 | Polyubiquitin OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55350 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_057297, gene-QYE76_071881 |