Basic Information
Locus ID:
gene-QYE76_070877
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
VWA / Hh protein intein-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 400520267 | 400522140 | - | gene-QYE76_070877 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.12 | 47,339.64 Da | 50.28 | 72.51 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14624 | VWA / Hh protein intein-like | 320 | 391 | 5.0E-13 | IPR032838 |
| Pfam | PF00092 | von Willebrand factor type A domain | 154 | 247 | 1.9E-13 | IPR002035 |
| SUPERFAMILY | SSF53300 | vWA-like | 149 | 243 | 3.62E-19 | IPR036465 |
| SUPERFAMILY | SSF57850 | RING/U-box | 9 | 49 | 2.67E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 6 | 52 | 2.2E-6 | IPR013083 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 154 | 326 | 1.2E-23 | IPR036465 |
| SMART | SM00327 | VWA_4 | 152 | 355 | 6.9E-11 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 154 | 366 | 11.027727 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 427 | 446 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 418 | 446 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 255 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_047083527.1 | E3 ubiquitin-protein ligase WAV3-like [Lolium rigidum] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453J5J6 | Zinc finger (C3HC4-type RING finger) family protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 3 | Ftri13G26327, Ftri3G03542, Ftri8G07275 |
| Brassicaceae | Brassica nigra | 1 | BniB05g046860.2N |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_044936, gene-QYE76_061876, gene-QYE76_070877 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC3AG034800 |
| Solanaceae | Solanum chilense | 1 | SOLCI004069200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009889 |