Basic Information
Locus ID:
gene-QYE76_070820
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 398794303 | 398795655 | + | gene-QYE76_070820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.20 | 48,086.72 Da | 42.48 | 70.27 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 150 | 183 | 3.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 313 | 347 | 3.4E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 148 | 439 | 4.09E-43 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 275 | 449 | 4.1E-23 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 138 | 274 | 3.1E-20 | IPR015943 |
| SMART | SM00320 | WD40_4 | 359 | 401 | 36.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 311 | 348 | 2.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 226 | 263 | 40.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 404 | 441 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 144 | 183 | 4.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 270 | 308 | 0.097 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 27 | 53 | 12.689934 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 151 | 183 | 10.811958 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 295 | 317 | 10.074014 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 151 | 192 | 13.68318 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 318 | 347 | 8.637032 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 295 | 309 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 335 | 349 | 6.9E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 170 | 184 | 6.9E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 295 | 309 | 6.9E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49200.1 | WD-40 repeat family protein / zfwd4 protein (ZFWD4). | 0 |
| RefSeq | XP_051182832.1 | zinc finger CCCH domain-containing protein 17-like [Lolium perenne] | 0 |
| Q9FE91 | Zinc finger CCCH domain-containing protein 62 OS=Arabidopsis thaliana OX=3702 GN=ZFWD4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8I6XI53 | C3H1-type domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology