Basic Information
Locus ID:
gene-QYE76_070777
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 397421437 | 397427009 | + | gene-QYE76_070777 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 99,775.00 Da | 48.64 | 74.27 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 113 | 248 | 2.2E-14 | - |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 589 | 831 | 8.8E-71 | IPR013103 |
| Pfam | PF14244 | gag-polypeptide of LTR copia-type | 49 | 86 | 8.1E-6 | IPR029472 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 588 | 872 | 9.78E-26 | IPR043502 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 312 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23160.2 | - | 0 |
| RefSeq | XP_021319258.1 | uncharacterized protein LOC110436480 [Sorghum bicolor] | 0 |
| Q94HW2 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1 | 0 | |
| TrEMBL | Q94LQ7 | Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os10g40800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 25 | gene-QYE76_002067, gene-QYE76_002068, gene-QYE76_008283 ... |