halophFGD

Basic Information

Locus ID: gene-QYE76_069893

Species & Taxonomic ID: Lolium multiflorum & 4521

Genome Assembly: GCA_030979885.1

Description: Reverse transcriptase (RNA-dependent DNA polymerase)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	368875808	368886103	+	gene-QYE76_069893

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.95	90,521.01 Da	61.19	76.96	-0.34

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd10017	B3_DNA	480	558	3.18774E-11	IPR003340
CDD	cd00042	CY	686	770	6.72477E-13	IPR000010
Pfam	PF16845	Aspartic acid proteinase inhibitor	691	771	8.5E-18	IPR000010
Pfam	PF02362	B3 DNA binding domain	480	558	1.1E-7	IPR003340
Pfam	PF07727	Reverse transcriptase (RNA-dependent DNA polymerase)	182	275	6.0E-27	IPR013103
SUPERFAMILY	SSF101936	DNA-binding pseudobarrel domain	479	560	1.96E-12	IPR015300
SUPERFAMILY	SSF54403	Cystatin/monellin	680	771	4.62E-21	-
Gene3D	G3DSA:3.10.450.10	-	678	778	1.9E-23	-
Gene3D	G3DSA:2.40.330.10	-	473	561	1.4E-10	IPR015300
SMART	SM01019	B3_2	466	560	0.0022	IPR003340
SMART	SM00043	CY_4	683	773	2.5E-10	IPR000010
ProSiteProfiles	PS50863	B3 DNA-binding domain profile.	481	560	10.743172	IPR003340
ProSitePatterns	PS00287	Cysteine proteases inhibitors signature.	728	741	-	IPR018073
MobiDBLite	mobidb-lite	consensus disorder prediction	398	442	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	105	123	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	419	435	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	103	135	-	-

Gene Ontology

Molecular Function:

Best hit

Source	Best Hit ID	Description
TAIR	AT4G23160.2	-
RefSeq	XP_023158131.2	uncharacterized protein LOC103653943 isoform X1 [Zea mays]
Swiss-Prot	P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
TrEMBL	I1PI69	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Oryza glaberrima OX=4538 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Lolium multiflorum	64	gene-QYE76_002052, gene-QYE76_003543, gene-QYE76_004726 ... gene-QYE76_006175, gene-QYE76_006719, gene-QYE76_009057, gene-QYE76_010799, gene-QYE76_011556, gene-QYE76_011818, gene-QYE76_012294, gene-QYE76_014773, gene-QYE76_014872, gene-QYE76_015580, gene-QYE76_016249, gene-QYE76_021805, gene-QYE76_021846, gene-QYE76_022185, gene-QYE76_022204, gene-QYE76_027276, gene-QYE76_027565, gene-QYE76_029265, gene-QYE76_029526, gene-QYE76_029916, gene-QYE76_029962, gene-QYE76_030323, gene-QYE76_030324, gene-QYE76_030455, gene-QYE76_031019, gene-QYE76_031708, gene-QYE76_031908, gene-QYE76_032572, gene-QYE76_034782, gene-QYE76_036490, gene-QYE76_036989, gene-QYE76_037826, gene-QYE76_039240, gene-QYE76_039685, gene-QYE76_043780, gene-QYE76_045993, gene-QYE76_046942, gene-QYE76_048980, gene-QYE76_050196, gene-QYE76_051171, gene-QYE76_053874, gene-QYE76_054023, gene-QYE76_054858, gene-QYE76_058568, gene-QYE76_059121, gene-QYE76_059323, gene-QYE76_061610, gene-QYE76_062152, gene-QYE76_063804, gene-QYE76_063805, gene-QYE76_064737, gene-QYE76_064835, gene-QYE76_066506, gene-QYE76_067586, gene-QYE76_068062, gene-QYE76_068188, gene-QYE76_068845, gene-QYE76_069151, gene-QYE76_069485, gene-QYE76_069893, gene-QYE76_071046