halophFGD

Basic Information

Locus ID: gene-QYE76_069648

Species & Taxonomic ID: Lolium multiflorum & 4521

Genome Assembly: GCA_030979885.1

Description: Reverse transcriptase (RNA-dependent DNA polymerase)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	359784820	359804350	-	gene-QYE76_069648

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.77	200,016.73 Da	45.78	75.16	-0.46

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd09272	RNase_HI_RT_Ty1	1356	1466	5.05868E-35	-
Pfam	PF14223	gag-polypeptide of LTR copia-type	720	810	6.2E-13	-
Pfam	PF00098	Zinc knuckle	863	878	1.6E-6	IPR001878
Pfam	PF07727	Reverse transcriptase (RNA-dependent DNA polymerase)	1173	1271	4.6E-19	IPR013103
Pfam	PF07727	Reverse transcriptase (RNA-dependent DNA polymerase)	1064	1172	1.3E-36	IPR013103
SUPERFAMILY	SSF56672	DNA/RNA polymerases	1065	1451	6.67E-23	IPR043502
SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	852	885	5.58E-8	IPR036875
Gene3D	G3DSA:4.10.60.10	-	855	888	1.0E-6	-
SMART	SM00343	c2hcfinal6	862	878	4.3E-5	IPR001878
ProSiteProfiles	PS50158	Zinc finger CCHC-type profile.	863	878	11.086722	IPR001878
MobiDBLite	mobidb-lite	consensus disorder prediction	681	707	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1730	1755	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	20	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	816	840	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	688	707	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1784	1801	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	808	840	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	24	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1730	1801	-	-
Coils	Coil	Coil	371	407	-	-

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0008270 (zinc ion binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G23160.2	-
RefSeq	XP_051204969.1	uncharacterized protein LOC127318529 [Lolium perenne]
Swiss-Prot	P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
TrEMBL	Q8LSK0	Gag and Pol OS=Zea mays OX=4577 GN=gag/pol PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Salicornia bigelovii	1	Sbi_jg49723
Asteraceae	Flaveria trinervia	3	Ftri16G33087, Ftri3G20908, Ftri8G30898
Poaceae	Lolium multiflorum	72	gene-QYE76_001045, gene-QYE76_002921, gene-QYE76_003125 ... gene-QYE76_003340, gene-QYE76_003915, gene-QYE76_003917, gene-QYE76_004923, gene-QYE76_005585, gene-QYE76_006139, gene-QYE76_006605, gene-QYE76_007873, gene-QYE76_008436, gene-QYE76_010084, gene-QYE76_011520, gene-QYE76_011953, gene-QYE76_012207, gene-QYE76_013020, gene-QYE76_013261, gene-QYE76_013644, gene-QYE76_014200, gene-QYE76_015017, gene-QYE76_022095, gene-QYE76_024919, gene-QYE76_025426, gene-QYE76_026897, gene-QYE76_027380, gene-QYE76_030158, gene-QYE76_030810, gene-QYE76_031198, gene-QYE76_031694, gene-QYE76_033544, gene-QYE76_034396, gene-QYE76_036129, gene-QYE76_036893, gene-QYE76_037055, gene-QYE76_037924, gene-QYE76_038468, gene-QYE76_039022, gene-QYE76_039134, gene-QYE76_043377, gene-QYE76_044275, gene-QYE76_048695, gene-QYE76_048902, gene-QYE76_049180, gene-QYE76_049287, gene-QYE76_049337, gene-QYE76_049648, gene-QYE76_050084, gene-QYE76_050146, gene-QYE76_050801, gene-QYE76_053034, gene-QYE76_057171, gene-QYE76_057271, gene-QYE76_057605, gene-QYE76_058294, gene-QYE76_058619, gene-QYE76_059435, gene-QYE76_060735, gene-QYE76_061320, gene-QYE76_061490, gene-QYE76_062413, gene-QYE76_063597, gene-QYE76_064028, gene-QYE76_064528, gene-QYE76_066514, gene-QYE76_066629, gene-QYE76_067159, gene-QYE76_067840, gene-QYE76_069241, gene-QYE76_069442, gene-QYE76_069523, gene-QYE76_069648