Basic Information
Locus ID:
gene-QYE76_069646
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 359750964 | 359759259 | + | gene-QYE76_069646 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 102,827.49 Da | 46.17 | 90.08 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 353 | 450 | 7.24688E-13 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 53 | 143 | 3.8E-9 | IPR005162 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 620 | 682 | 3.45E-12 | IPR043502 |
| SUPERFAMILY | SSF50630 | Acid proteases | 350 | 458 | 2.15E-5 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 334 | 474 | 4.8E-18 | IPR021109 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 611 | 754 | 5.7E-17 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 759 | 790 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 759 | 775 | - | - |
| Coils | Coil | Coil | 746 | 773 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039682991.1 | uncharacterized protein LOC120576082 [Medicago truncatula] | 0 |
| TrEMBL | M8BEJ4 | Uncharacterized protein OS=Aegilops tauschii OX=37682 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 203 | gene-QYE76_000478, gene-QYE76_000950, gene-QYE76_001438 ... |