Basic Information
Locus ID:
gene-QYE76_069568
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Short Name:
CMT1
Description:
C-5 cytosine-specific DNA methylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 356093564 | 356099345 | + | gene-QYE76_069568 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 108,019.51 Da | 41.43 | 70.76 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 502 | 556 | 2.01159E-29 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 502 | 557 | 1.7E-9 | IPR023780 |
| Pfam | PF01426 | BAH domain | 236 | 356 | 1.2E-10 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 567 | 927 | 3.7E-32 | IPR001525 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 489 | 557 | 2.75E-11 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 400 | 927 | 9.24E-73 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 381 | 490 | 7.5E-13 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 720 | 893 | 1.5E-221 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 178 | 343 | 6.9E-46 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 501 | 945 | 1.5E-221 | - |
| SMART | SM00439 | BAH_4 | 234 | 358 | 3.6E-18 | IPR001025 |
| SMART | SM00298 | chromo_7 | 501 | 560 | 2.9E-5 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 400 | 934 | 44.347801 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 234 | 358 | 16.671749 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 502 | 555 | 11.833501 | IPR000953 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 572 | 584 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 661 | 674 | 2.8E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 401 | 417 | 2.8E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 615 | 629 | 2.8E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 216 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 216 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 124 | 151 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 22 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_051182284.1 | DNA (cytosine-5)-methyltransferase CMT1-like [Lolium perenne] | 0 |
| A0A0P0VUY4 | DNA (cytosine-5)-methyltransferase CMT1 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2K2DU51 | DNA (cytosine-5-)-methyltransferase OS=Brachypodium distachyon OX=15368 GN=BRADI_1g68985v3 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology