Basic Information
Locus ID:
gene-QYE76_069222
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 343519753 | 343527052 | - | gene-QYE76_069222 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.70 | 125,827.26 Da | 40.48 | 80.21 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 462 | 495 | 9.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 926 | 959 | 0.0038 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 478 | 964 | 2.2E-42 | IPR011047 |
| SUPERFAMILY | SSF51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 900 | 1105 | 1.18E-15 | IPR011048 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 352 | 539 | 9.16E-25 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 334 | 517 | 1.9E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 971 | 1118 | 7.3E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 520 | 700 | 7.8E-13 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 747 | 970 | 1.8E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 589 | 629 | 5.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1011 | 1052 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 632 | 673 | 370.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 349 | 388 | 28.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 5.2E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 499 | 540 | 0.13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 920 | 959 | 2.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 877 | 917 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 455 | 496 | 1.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 837 | 874 | 49.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 405 | 449 | 18.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.3E-12 | IPR006595 |
| SMART | SM00320 | WD40_4 | 543 | 586 | 28.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 927 | 968 | 12.480124 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 927 | 959 | 10.205597 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 12.933373 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 462 | 505 | 9.97376 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.212169 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 483 | 497 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1107 | 1141 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1117 | 1141 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 318 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_051182194.1 | protein TPR3 isoform X4 [Lolium perenne] | 0 |
| Q10NY2 | Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D5XWZ6 | TOPLESS OS=Triticum aestivum OX=4565 GN=TPL PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology