halophFGD

Basic Information

Locus ID: gene-QYE76_069151

Species & Taxonomic ID: Lolium multiflorum & 4521

Genome Assembly: GCA_030979885.1

Description: zinc finger

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	341182576	341185546	-	gene-QYE76_069151

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.29	43,062.83 Da	39.63	71.87	-0.35

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00018	AP2	9	54	1.23228E-12	IPR001471
Pfam	PF14223	gag-polypeptide of LTR copia-type	174	295	2.9E-16	-
Pfam	PF00098	Zinc knuckle	342	358	1.6E-5	IPR001878
SUPERFAMILY	SSF54171	DNA-binding domain	10	55	6.41E-10	IPR016177
SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	332	363	3.49E-8	IPR036875
Gene3D	G3DSA:4.10.60.10	-	308	370	3.0E-5	-
Gene3D	G3DSA:3.30.730.10	AP2/ERF domain	10	65	1.1E-10	IPR036955
SMART	SM00380	rav1_2	10	71	1.4E-5	IPR001471
SMART	SM00343	c2hcfinal6	342	358	4.2E-4	IPR001878
ProSiteProfiles	PS51032	AP2/ERF domain profile.	10	65	14.091107	IPR001471
ProSiteProfiles	PS50158	Zinc finger CCHC-type profile.	343	358	9.735132	IPR001878
MobiDBLite	mobidb-lite	consensus disorder prediction	363	391	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	305	331	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	358	391	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	292	334	-	-

Gene Ontology

Biological Process:

GO:0006355 (regulation of DNA-templated transcription)

Molecular Function:

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_048551924.1	uncharacterized protein LOC125531639 isoform X2 [Triticum urartu]	0
TrEMBL	A0A7H4LNV9	Genome assembly, chromosome: II OS=Triticum aestivum OX=4565 GN=CAMPLR22A2D_LOCUS4928 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Lolium multiflorum	64	gene-QYE76_002052, gene-QYE76_003543, gene-QYE76_004726 ... gene-QYE76_006175, gene-QYE76_006719, gene-QYE76_009057, gene-QYE76_010799, gene-QYE76_011556, gene-QYE76_011818, gene-QYE76_012294, gene-QYE76_014773, gene-QYE76_014872, gene-QYE76_015580, gene-QYE76_016249, gene-QYE76_021805, gene-QYE76_021846, gene-QYE76_022185, gene-QYE76_022204, gene-QYE76_027276, gene-QYE76_027565, gene-QYE76_029265, gene-QYE76_029526, gene-QYE76_029916, gene-QYE76_029962, gene-QYE76_030323, gene-QYE76_030324, gene-QYE76_030455, gene-QYE76_031019, gene-QYE76_031708, gene-QYE76_031908, gene-QYE76_032572, gene-QYE76_034782, gene-QYE76_036490, gene-QYE76_036989, gene-QYE76_037826, gene-QYE76_039240, gene-QYE76_039685, gene-QYE76_043780, gene-QYE76_045993, gene-QYE76_046942, gene-QYE76_048980, gene-QYE76_050196, gene-QYE76_051171, gene-QYE76_053874, gene-QYE76_054023, gene-QYE76_054858, gene-QYE76_058568, gene-QYE76_059121, gene-QYE76_059323, gene-QYE76_061610, gene-QYE76_062152, gene-QYE76_063804, gene-QYE76_063805, gene-QYE76_064737, gene-QYE76_064835, gene-QYE76_066506, gene-QYE76_067586, gene-QYE76_068062, gene-QYE76_068188, gene-QYE76_068845, gene-QYE76_069151, gene-QYE76_069485, gene-QYE76_069893, gene-QYE76_071046