Basic Information
Locus ID:
gene-QYE76_068989
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 335560902 | 335566426 | + | gene-QYE76_068989 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 73,188.81 Da | 41.87 | 102.26 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 258 | 300 | 4.33408E-27 | - |
| Pfam | PF04564 | U-box domain | 254 | 324 | 2.7E-20 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 380 | 418 | 8.7E-8 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 462 | 500 | 2.0E-7 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 243 | 330 | 3.03E-31 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 353 | 628 | 1.04E-47 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 252 | 327 | 7.6E-32 | IPR013083 |
| Gene3D | G3DSA:1.20.930.20 | - | 12 | 124 | 6.1E-10 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 334 | 487 | 3.9E-30 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 489 | 632 | 2.2E-20 | IPR011989 |
| SMART | SM00185 | arm_5 | 379 | 419 | 2.6E-5 | IPR000225 |
| SMART | SM00185 | arm_5 | 543 | 583 | 130.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 461 | 501 | 0.008 | IPR000225 |
| SMART | SM00185 | arm_5 | 502 | 542 | 5.8 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 257 | 320 | 1.4E-32 | IPR003613 |
| SMART | SM00185 | arm_5 | 587 | 627 | 180.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 420 | 460 | 7.4 | IPR000225 |
| SMART | SM00185 | arm_5 | 337 | 377 | 310.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 513 | 555 | 9.8174 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 390 | 432 | 10.9724 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 253 | 327 | 44.699089 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_047090160.1 | protein spotted leaf 11-like [Lolium rigidum] | 0 |
| A2ZLU6 | Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2 | 0 | |
| TrEMBL | I1H6Y5 | RING-type E3 ubiquitin transferase OS=Brachypodium distachyon OX=15368 GN=100831702 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology