halophFGD

Basic Information

Locus ID: gene-QYE76_068758

Species & Taxonomic ID: Lolium multiflorum & 4521

Genome Assembly: GCA_030979885.1

Description: cellular macromolecule catabolic process

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	328524191	328524580	-	gene-QYE76_068758

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.44	14,324.85 Da	38.33	90.70	-0.35

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00240	Ubiquitin family	54	91	1.1E-6	IPR000626
Pfam	PF01020	Ribosomal L40e family	103	123	1.0E-5	IPR001975
Pfam	PF00240	Ubiquitin family	3	37	2.9E-9	IPR000626
SUPERFAMILY	SSF54236	Ubiquitin-like	1	94	1.96E-19	IPR029071
Gene3D	G3DSA:3.10.20.90	-	1	101	1.8E-28	-
SMART	SM00213	ubq_7	1	90	1.5E-12	IPR000626
ProSiteProfiles	PS50053	Ubiquitin domain profile.	1	94	19.237774	IPR000626

Gene Ontology

Biological Process:

GO:0006412 (translation)

Molecular Function:

Cellular Component:

GO:0005840 (ribosome)

KEGG Pathway

KO Term:

K08770 (ubiquitin C)

Pathway:

ko03320 (PPAR signaling pathway) map03320 (PPAR signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G36170.1	Ubiquitin supergroup;Ribosomal protein L40e.
RefSeq	XP_051181780.1	ubiquitin-60S ribosomal protein L40-1-like [Lolium perenne]
Swiss-Prot	P0CH34	Ubiquitin-ribosomal protein eL40z fusion protein OS=Oryza sativa subsp. japonica OX=39947 GN=Ub-CEP52-1 PE=1 SV=1
TrEMBL	A0A3B6BZS4	Ubiquitin-like domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Lolium multiflorum	4	gene-QYE76_020686, gene-QYE76_068757, gene-QYE76_068758 ... gene-QYE76_068759