Basic Information
Locus ID:
gene-QYE76_068328
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Sigma factor PP2C-like phosphatases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 313828570 | 313837815 | - | gene-QYE76_068328 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 101,995.43 Da | 39.66 | 82.17 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00143 | PP2Cc | 251 | 441 | 4.13892E-52 | IPR001932 |
| CDD | cd00143 | PP2Cc | 1 | 258 | 2.43416E-62 | IPR001932 |
| Pfam | PF00481 | Protein phosphatase 2C | 12 | 258 | 8.4E-49 | IPR001932 |
| Pfam | PF00481 | Protein phosphatase 2C | 261 | 431 | 6.3E-44 | IPR001932 |
| Pfam | PF00240 | Ubiquitin family | 476 | 544 | 6.0E-23 | IPR000626 |
| Pfam | PF02365 | No apical meristem (NAM) protein | 572 | 702 | 1.2E-13 | IPR003441 |
| SUPERFAMILY | SSF81606 | PP2C-like | 1 | 258 | 1.44E-55 | IPR036457 |
| SUPERFAMILY | SSF101941 | NAC domain | 572 | 717 | 5.23E-20 | IPR036093 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 432 | 550 | 6.68E-25 | IPR029071 |
| SUPERFAMILY | SSF81606 | PP2C-like | 262 | 444 | 7.72E-47 | IPR036457 |
| Gene3D | G3DSA:2.170.150.80 | NAC domain | 575 | 722 | 3.0E-21 | IPR036093 |
| Gene3D | G3DSA:3.10.20.90 | - | 470 | 565 | 2.6E-31 | - |
| Gene3D | G3DSA:3.60.40.10 | - | 261 | 449 | 7.5E-56 | IPR036457 |
| Gene3D | G3DSA:3.60.40.10 | - | 1 | 260 | 9.8E-68 | IPR036457 |
| SMART | SM00332 | PP2C_4 | 1 | 253 | 8.9E-49 | IPR001932 |
| SMART | SM00213 | ubq_7 | 474 | 545 | 6.0E-25 | IPR000626 |
| SMART | SM00332 | PP2C_4 | 254 | 439 | 6.6E-24 | IPR001932 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 474 | 549 | 23.919485 | IPR000626 |
| ProSiteProfiles | PS51746 | PPM-type phosphatase domain profile. | 1 | 441 | 44.147083 | IPR001932 |
| ProSiteProfiles | PS51005 | NAC domain profile. | 723 | 869 | 9.819959 | IPR003441 |
| ProSiteProfiles | PS51005 | NAC domain profile. | 565 | 718 | 26.618252 | IPR003441 |
| ProSitePatterns | PS01032 | PPM-type phosphatase domain signature. | 19 | 27 | - | IPR000222 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 500 | 525 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 484 | 504 | 6.6E-21 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 505 | 525 | 6.6E-21 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 526 | 547 | 6.6E-21 | IPR019956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 884 | 908 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 884 | 923 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31860.3 | - | 0 |
| RefSeq | XP_051229815.1 | NAC domain-containing protein 86-like [Lolium perenne] | 0 |
| A3A8W2 | Probable protein phosphatase 2C 21 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0606900 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8R7U8W8 | protein-serine/threonine phosphatase OS=Triticum urartu OX=4572 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_022773, gene-QYE76_053431, gene-QYE76_068327 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-18588 |