Basic Information
Locus ID:
gene-QYE76_068235
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 309836462 | 309843432 | - | gene-QYE76_068235 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 110,397.37 Da | 52.62 | 89.28 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 630 | 670 | 2.2E-9 | IPR041577 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 417 | 707 | 5.34E-73 | IPR043502 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 409 | 497 | 9.3E-17 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 498 | 566 | 6.5E-14 | IPR043128 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 168 | 282 | 2.7E-5 | IPR021109 |
| Gene3D | G3DSA:3.30.70.270 | - | 576 | 669 | 6.9E-28 | IPR043128 |
| Coils | Coil | Coil | 811 | 831 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048538050.1 | uncharacterized protein LOC125516778, partial [Triticum urartu] | 0 |
| Q8I7P9 | Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A2G9HYA0 | RNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_04802 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |