Basic Information
Locus ID:
gene-QYE76_068152
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 306585151 | 306592020 | - | gene-QYE76_068152 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 127,034.87 Da | 48.00 | 89.23 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09274 | RNase_HI_RT_Ty3 | 798 | 916 | 1.75011E-56 | - |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 767 | 865 | 6.4E-34 | IPR041577 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 677 | 899 | 1.48E-71 | IPR043502 |
| Gene3D | G3DSA:3.30.70.270 | - | 611 | 710 | 1.6E-7 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 713 | 806 | 1.5E-27 | IPR043128 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 398 | 515 | 2.8E-5 | IPR021109 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1102 | 1121 | - | - |
| Coils | Coil | Coil | 1003 | 1023 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048538050.1 | uncharacterized protein LOC125516778, partial [Triticum urartu] | 0 |
| Q8I7P9 | Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A2N9IKQ4 | RT_RNaseH_2 domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52505 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |