Basic Information
Locus ID:
gene-QYE76_067912
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
CHY zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 298682204 | 298683629 | - | gene-QYE76_067912 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.68 | 20,847.02 Da | 43.45 | 53.06 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 113 | 171 | 4.3E-13 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 64 | 108 | 7.1E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 65 | 115 | 1.09E-11 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 2 | 59 | 2.48E-20 | IPR037275 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 51 | 129 | 3.5E-12 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 138 | 175 | 9.9E-8 | - |
| SMART | SM00184 | ring_2 | 66 | 108 | 4.7E-6 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1 | 65 | 33.161037 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 66 | 109 | 11.707369 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_051214314.1 | E3 ubiquitin-protein ligase SRFP1 isoform X2 [Lolium perenne] | 0 |
| Q10LI1 | E3 ubiquitin-protein ligase SRFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SRFP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453HBZ3 | RING-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology