Basic Information
Locus ID:
gene-QYE76_067805
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 295313111 | 295317428 | - | gene-QYE76_067805 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.80 | 35,782.77 Da | 41.34 | 76.01 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 184 | 312 | 6.55227E-62 | - |
| CDD | cd16571 | RING-HC_SIAHs | 68 | 106 | 1.04038E-13 | - |
| Pfam | PF03145 | Seven in absentia protein family | 112 | 311 | 1.8E-78 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 64 | 111 | 2.94E-6 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 123 | 315 | 1.57E-44 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 123 | 178 | 2.8E-15 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 179 | 311 | 1.7E-37 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 51 | 122 | 4.9E-7 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 123 | 183 | 13.818609 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 70 | 106 | 9.258371 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_047090550.1 | E3 ubiquitin-protein ligase DIS1 [Lolium rigidum] | 0 |
| Q10L91 | E3 ubiquitin-protein ligase DIS1 OS=Oryza sativa subsp. japonica OX=39947 GN=DIS1 PE=1 SV=1 | 0 | |
| TrEMBL | I1H5D3 | RING-type E3 ubiquitin transferase OS=Brachypodium distachyon OX=15368 GN=100832893 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology