Basic Information
Locus ID:
gene-QYE76_067660
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Ubiquitin homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 290089192 | 290101477 | - | gene-QYE76_067660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 48,904.67 Da | 48.75 | 86.78 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 264 | 334 | 1.98947E-5 | - |
| Pfam | PF00240 | Ubiquitin family | 342 | 411 | 2.8E-10 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 115 | 181 | 1.7E-13 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 189 | 258 | 9.5E-17 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 98 | 180 | 1.51E-14 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 182 | 259 | 9.54E-19 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 251 | 335 | 4.47E-11 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 334 | 411 | 7.21E-14 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 336 | 416 | 3.7E-12 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 113 | 180 | 1.3E-16 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 181 | 260 | 2.3E-20 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 261 | 335 | 1.2E-9 | - |
| SMART | SM00213 | ubq_7 | 262 | 337 | 1.3 | IPR000626 |
| SMART | SM00213 | ubq_7 | 340 | 411 | 1.5E-4 | IPR000626 |
| SMART | SM00213 | ubq_7 | 185 | 257 | 1.1E-11 | IPR000626 |
| SMART | SM00213 | ubq_7 | 113 | 182 | 1.8E-11 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 185 | 261 | 18.671614 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 340 | 415 | 13.706824 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 262 | 334 | 11.006675 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 113 | 182 | 15.862589 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 196 | 216 | 3.6E-9 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 217 | 237 | 3.6E-9 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 238 | 259 | 3.6E-9 | IPR019956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 417 | 438 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.3 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 0 |
| RefSeq | XP_047088405.1 | polyubiquitin-like [Lolium rigidum] | 0 |
| P0CG82 | Polyubiquitin OS=Tetrahymena pyriformis OX=5908 GN=TU20 PE=3 SV=1 | 0 | |
| TrEMBL | A0A452YF51 | Polyubiquitin-like OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH01.1773, BH01.2094, CH01.2025, CH01.2026, CH01.2027 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0127800, gene-QOZ80_2BG0183260 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0042620.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_017527, gene-QYE76_067660 |
| Poaceae | Oryza coarctata | 2 | Oco19G005960, Oco20G005870 |
| Poaceae | Oryza sativa | 2 | LOC_Os10g33620.1, LOC_Os11g18670.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G206400 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G011030, Chr13G014190 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG028140 |
| Poaceae | Triticum aestivum | 2 | TraesCS1B02G171700.1, TraesCS1D02G151600.1 |
| Poaceae | Zea mays | 1 | Zm00001eb045950_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19226 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16186 |