Basic Information
Locus ID:
gene-QYE76_066865
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 259913941 | 259930742 | - | gene-QYE76_066865 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.84 | 79,234.78 Da | 41.63 | 83.19 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09279 | RNase_HI_like | 544 | 664 | 4.90139E-32 | - |
| Pfam | PF13456 | Reverse transcriptase-like | 548 | 645 | 9.1E-11 | IPR002156 |
| Pfam | PF04827 | Plant transposon protein | 41 | 94 | 5.1E-10 | IPR006912 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 543 | 646 | 8.22E-18 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 542 | 675 | 3.6E-21 | IPR036397 |
| ProSiteProfiles | PS50879 | RNase H domain profile. | 540 | 681 | 10.181205 | IPR002156 |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051191609.1 | uncharacterized protein LOC127305246 [Lolium perenne] | 0 |
| TrEMBL | A0A2T8IME4 | DUF641 domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_5G366500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000027960 |
| Poaceae | Lolium multiflorum | 225 | gene-QYE76_000112, gene-QYE76_000237, gene-QYE76_000651 ... |
| Poaceae | Oryza sativa | 1 | ChrSy.fgenesh.mRNA.19 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G009620, Chr05G009630, Chr20G008400 |