Basic Information
Locus ID:
gene-QYE76_066525
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 245968195 | 245974941 | + | gene-QYE76_066525 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 98,954.14 Da | 49.90 | 86.73 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 558 | 687 | 5.25509E-34 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 129 | 219 | 2.1E-9 | IPR005162 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 518 | 713 | 1.11E-48 | IPR043502 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 509 | 637 | 5.4E-31 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 653 | 693 | 8.9E-9 | IPR043128 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 265 | 383 | 4.2E-5 | IPR021109 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
| Coils | Coil | Coil | 791 | 811 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_022861324.1 | uncharacterized protein LOC111381741 [Olea europaea var. sylvestris] | 0 |
| P04323 | Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A2Z6P0N9 | RNA-directed DNA polymerase OS=Trifolium subterraneum OX=3900 GN=TSUD_290840 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |