Basic Information
Locus ID:
gene-QYE76_066021
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 226417696 | 226424232 | - | gene-QYE76_066021 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 35,657.96 Da | 39.89 | 75.59 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 159 | 233 | 1.20535E-49 | - |
| CDD | cd12352 | RRM1_TIA1_like | 75 | 145 | 3.33467E-34 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 160 | 230 | 1.2E-19 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 75 | 141 | 2.8E-13 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 62 | 151 | 7.12E-23 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 151 | 246 | 5.24E-29 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 157 | 3.7E-26 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 158 | 254 | 2.2E-26 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 159 | 232 | 6.4E-24 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 74 | 143 | 1.6E-16 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 158 | 236 | 18.171562 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 73 | 147 | 15.596196 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_051181231.1 | oligouridylate-binding protein 1B-like [Lolium perenne] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A453HXW2 | Oligouridylate binding protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology