Basic Information
Locus ID:
gene-QYE76_065875
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 220822643 | 220828875 | - | gene-QYE76_065875 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.70 | 48,387.68 Da | 42.61 | 67.22 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 76 | 146 | 2.22618E-33 | - |
| CDD | cd12354 | RRM3_TIA1_like | 280 | 354 | 4.57937E-34 | - |
| CDD | cd12619 | RRM2_PUB1 | 160 | 234 | 9.79156E-49 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 161 | 231 | 2.1E-19 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 76 | 142 | 4.6E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 282 | 348 | 1.8E-14 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 73 | 238 | 3.41E-45 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 273 | 359 | 8.42E-24 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 260 | 358 | 5.8E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 157 | 254 | 1.3E-27 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 156 | 1.8E-25 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 281 | 350 | 6.6E-19 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 160 | 233 | 6.4E-24 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 281 | 350 | 1.8 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 75 | 144 | 1.6E-16 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 160 | 233 | 0.038 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 159 | 237 | 18.171562 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 280 | 354 | 17.318792 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 74 | 148 | 15.596196 | IPR000504 |
| Coils | Coil | Coil | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_051181231.1 | oligouridylate-binding protein 1B-like [Lolium perenne] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | I1IK96 | Oligouridylate-binding protein 1-like OS=Brachypodium distachyon OX=15368 GN=100830774 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology