Basic Information
Locus ID:
gene-QYE76_065099
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 193935031 | 193941909 | + | gene-QYE76_065099 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 128,583.30 Da | 49.07 | 85.39 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09274 | RNase_HI_RT_Ty3 | 806 | 924 | 8.87576E-57 | - |
| CDD | cd00303 | retropepsin_like | 356 | 435 | 5.23194E-8 | - |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 775 | 873 | 2.8E-34 | IPR041577 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 644 | 907 | 7.34E-85 | IPR043502 |
| Gene3D | G3DSA:3.30.70.270 | - | 721 | 814 | 8.4E-28 | IPR043128 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 337 | 447 | 4.4E-9 | IPR021109 |
| Gene3D | G3DSA:3.30.70.270 | - | 576 | 718 | 1.4E-22 | IPR043128 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| Coils | Coil | Coil | 1011 | 1031 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048538050.1 | uncharacterized protein LOC125516778, partial [Triticum urartu] | 0 |
| Q8I7P9 | Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A2N9IZG6 | Reverse transcriptase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |