Basic Information
Locus ID:
gene-QYE76_064901
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 187719905 | 187728353 | - | gene-QYE76_064901 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 136,347.73 Da | 53.00 | 84.21 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 551 | 628 | 1.4557E-6 | - |
| CDD | cd09274 | RNase_HI_RT_Ty3 | 874 | 992 | 6.1018E-57 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 251 | 341 | 3.2E-9 | IPR005162 |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 843 | 941 | 4.3E-34 | IPR041577 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 712 | 975 | 9.12E-85 | IPR043502 |
| Gene3D | G3DSA:3.30.70.270 | - | 789 | 882 | 1.7E-27 | IPR043128 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 532 | 635 | 4.3E-7 | IPR021109 |
| Gene3D | G3DSA:3.30.70.270 | - | 677 | 786 | 2.8E-23 | IPR043128 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1019 | 1066 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1030 | 1049 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 97 | 128 | - | - |
| Coils | Coil | Coil | 1174 | 1194 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048538050.1 | uncharacterized protein LOC125516778, partial [Triticum urartu] | 0 |
| Q8I7P9 | Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A6D2J8K5 | Reverse transcriptase domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS26725 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 203 | gene-QYE76_000478, gene-QYE76_000950, gene-QYE76_001438 ... |