halophFGD

Basic Information

Locus ID: gene-QYE76_064162

Species & Taxonomic ID: Lolium multiflorum & 4521

Genome Assembly: GCA_030979885.1

Description: DNA RNA polymerases superfamily protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	159708869	159718720	+	gene-QYE76_064162

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.33	189,335.19 Da	47.64	83.30	-0.51

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd01647	RT_LTR	560	698	4.0812E-62	-
CDD	cd00303	retropepsin_like	361	450	7.45021E-20	-
Pfam	PF17919	RNase H-like domain found in reverse transcriptase	761	812	6.1E-15	IPR041577
Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	608	697	5.7E-17	IPR000477
Pfam	PF08284	Retroviral aspartyl protease	340	470	6.1E-43	-
Pfam	PF03732	Retrotransposon gag protein	886	976	4.9E-9	IPR005162
Pfam	PF03732	Retrotransposon gag protein	97	192	4.0E-22	IPR005162
Pfam	PF00098	Zinc knuckle	288	304	2.4E-5	IPR001878
SUPERFAMILY	SSF56672	DNA/RNA polymerases	1348	1463	3.34E-24	IPR043502
SUPERFAMILY	SSF50630	Acid proteases	354	457	3.75E-11	IPR021109
SUPERFAMILY	SSF56672	DNA/RNA polymerases	500	815	2.22E-121	IPR043502
SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	270	309	8.89E-6	IPR036875
Gene3D	G3DSA:3.30.70.270	-	624	698	1.1E-38	IPR043128
Gene3D	G3DSA:2.40.70.10	Acid Proteases	345	475	3.6E-20	IPR021109
Gene3D	G3DSA:3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	596	623	1.1E-38	-
Gene3D	G3DSA:3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	522	595	3.3E-23	-
Gene3D	G3DSA:3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	1339	1488	2.1E-28	-
Gene3D	G3DSA:3.30.70.270	-	708	797	2.8E-30	IPR043128
SMART	SM00343	c2hcfinal6	288	304	9.1E-5	IPR001878
ProSiteProfiles	PS50158	Zinc finger CCHC-type profile.	289	304	10.180168	IPR001878
ProSitePatterns	PS00141	Eukaryotic and viral aspartyl proteases active site.	371	382	-	IPR001969
MobiDBLite	mobidb-lite	consensus disorder prediction	235	261	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	319	337	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1498	1517	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1490	1534	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	302	345	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	247	261	-	-
Coils	Coil	Coil	1642	1662	-	-

Gene Ontology

Biological Process:

GO:0006508 (proteolysis)

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0004190 (aspartic-type endopeptidase activity) GO:0008270 (zinc ion binding)

Best hit

Source	Best Hit ID	Description
RefSeq	XP_051211622.1	uncharacterized protein LOC127329119 [Lolium perenne]
Swiss-Prot	P20825	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
TrEMBL	Q8LNB2	RNA-directed DNA polymerase OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0047G15.15 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Lolium multiflorum	203	gene-QYE76_000478, gene-QYE76_000950, gene-QYE76_001438 ... gene-QYE76_001923, gene-QYE76_002013, gene-QYE76_002313, gene-QYE76_002482, gene-QYE76_002497, gene-QYE76_002538, gene-QYE76_002715, gene-QYE76_003008, gene-QYE76_003118, gene-QYE76_003166, gene-QYE76_003486, gene-QYE76_003766, gene-QYE76_004082, gene-QYE76_004566, gene-QYE76_004715, gene-QYE76_005068, gene-QYE76_005221, gene-QYE76_005504, gene-QYE76_005835, gene-QYE76_006810, gene-QYE76_007854, gene-QYE76_009754, gene-QYE76_009817, gene-QYE76_010620, gene-QYE76_010780, gene-QYE76_010949, gene-QYE76_010963, gene-QYE76_011002, gene-QYE76_011280, gene-QYE76_011417, gene-QYE76_011674, gene-QYE76_011687, gene-QYE76_011775, gene-QYE76_011922, gene-QYE76_012139, gene-QYE76_012197, gene-QYE76_012685, gene-QYE76_012755, gene-QYE76_012837, gene-QYE76_012896, gene-QYE76_013414, gene-QYE76_013929, gene-QYE76_015291, gene-QYE76_015790, gene-QYE76_016556, gene-QYE76_018973, gene-QYE76_019606, gene-QYE76_019931, gene-QYE76_020219, gene-QYE76_020338, gene-QYE76_020444, gene-QYE76_020842, gene-QYE76_021728, gene-QYE76_022036, gene-QYE76_022222, gene-QYE76_022805, gene-QYE76_023384, gene-QYE76_023460, gene-QYE76_023851, gene-QYE76_024192, gene-QYE76_024664, gene-QYE76_025680, gene-QYE76_025943, gene-QYE76_026121, gene-QYE76_026131, gene-QYE76_026203, gene-QYE76_027608, gene-QYE76_027648, gene-QYE76_028543, gene-QYE76_028760, gene-QYE76_028853, gene-QYE76_028945, gene-QYE76_028992, gene-QYE76_030015, gene-QYE76_030141, gene-QYE76_030388, gene-QYE76_030643, gene-QYE76_030956, gene-QYE76_030974, gene-QYE76_031328, gene-QYE76_031331, gene-QYE76_031372, gene-QYE76_031650, gene-QYE76_031744, gene-QYE76_031800, gene-QYE76_031856, gene-QYE76_031950, gene-QYE76_032322, gene-QYE76_032583, gene-QYE76_032754, gene-QYE76_032931, gene-QYE76_033132, gene-QYE76_033183, gene-QYE76_033188, gene-QYE76_034352, gene-QYE76_034498, gene-QYE76_034740, gene-QYE76_035694, gene-QYE76_035780, gene-QYE76_036777, gene-QYE76_037456, gene-QYE76_037509, gene-QYE76_038394, gene-QYE76_038683, gene-QYE76_039093, gene-QYE76_039775, gene-QYE76_039940, gene-QYE76_040362, gene-QYE76_041075, gene-QYE76_041290, gene-QYE76_041315, gene-QYE76_041401, gene-QYE76_041430, gene-QYE76_041864, gene-QYE76_041956, gene-QYE76_042418, gene-QYE76_042656, gene-QYE76_042737, gene-QYE76_042766, gene-QYE76_043249, gene-QYE76_043593, gene-QYE76_043638, gene-QYE76_043655, gene-QYE76_043783, gene-QYE76_044233, gene-QYE76_044264, gene-QYE76_044330, gene-QYE76_044615, gene-QYE76_044685, gene-QYE76_044765, gene-QYE76_044855, gene-QYE76_045312, gene-QYE76_045646, gene-QYE76_045677, gene-QYE76_045706, gene-QYE76_046425, gene-QYE76_047698, gene-QYE76_048773, gene-QYE76_049187, gene-QYE76_049253, gene-QYE76_049578, gene-QYE76_049726, gene-QYE76_050465, gene-QYE76_050825, gene-QYE76_050890, gene-QYE76_050997, gene-QYE76_051044, gene-QYE76_051161, gene-QYE76_051501, gene-QYE76_051563, gene-QYE76_051686, gene-QYE76_051925, gene-QYE76_051993, gene-QYE76_052082, gene-QYE76_052241, gene-QYE76_052691, gene-QYE76_053008, gene-QYE76_053090, gene-QYE76_053100, gene-QYE76_053119, gene-QYE76_053410, gene-QYE76_053455, gene-QYE76_053686, gene-QYE76_054059, gene-QYE76_054828, gene-QYE76_054911, gene-QYE76_055188, gene-QYE76_055605, gene-QYE76_055788, gene-QYE76_056442, gene-QYE76_056905, gene-QYE76_057167, gene-QYE76_057448, gene-QYE76_057829, gene-QYE76_058616, gene-QYE76_059518, gene-QYE76_059829, gene-QYE76_061157, gene-QYE76_061968, gene-QYE76_064162, gene-QYE76_064314, gene-QYE76_064397, gene-QYE76_064465, gene-QYE76_064788, gene-QYE76_064901, gene-QYE76_065325, gene-QYE76_065474, gene-QYE76_065724, gene-QYE76_065747, gene-QYE76_065818, gene-QYE76_067269, gene-QYE76_067697, gene-QYE76_068411, gene-QYE76_068996, gene-QYE76_069069, gene-QYE76_069196, gene-QYE76_069510, gene-QYE76_069646, gene-QYE76_070251, gene-QYE76_070568