Basic Information
Locus ID:
gene-QYE76_064114
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 158304355 | 158309916 | - | gene-QYE76_064114 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.40 | 189,409.27 Da | 50.96 | 75.78 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1638 | 1731 | 1.8E-10 | IPR000477 |
| SUPERFAMILY | SSF56219 | DNase I-like | 1166 | 1360 | 4.97E-21 | IPR036691 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 493 | 534 | 5.23E-5 | IPR036875 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 1162 | 1360 | 6.0E-19 | IPR036691 |
| Gene3D | G3DSA:4.10.60.10 | - | 482 | 540 | 4.5E-6 | - |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 498 | 512 | 8.927475 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 297 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 482 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1116 | 1168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 896 | 915 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 891 | 1025 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1116 | 1130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 736 | 874 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 766 | 796 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 946 | 970 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 437 | - | - |
| Coils | Coil | Coil | 1068 | 1097 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G43760.1 | DNAse I-like superfamily protein. | 0 |
| RefSeq | XP_051229442.1 | uncharacterized protein LOC127347274 [Lolium perenne] | 0 |
| P14381 | Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1 | 0 | |
| TrEMBL | A0A453CMW0 | Endo/exonuclease/phosphatase domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 11 | gene-QYE76_006358, gene-QYE76_016631, gene-QYE76_025777 ... |