halophFGD

Basic Information

Locus ID: gene-QYE76_063804

Species & Taxonomic ID: Lolium multiflorum & 4521

Genome Assembly: GCA_030979885.1

Description: Reverse transcriptase (RNA-dependent DNA polymerase)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr4	146150592	146156878	-	gene-QYE76_063804

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.03	82,772.14 Da	33.17	76.72	-0.31

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF14223	gag-polypeptide of LTR copia-type	38	159	3.1E-16	-
Pfam	PF07727	Reverse transcriptase (RNA-dependent DNA polymerase)	376	471	4.5E-17	IPR013103
Pfam	PF00098	Zinc knuckle	206	222	2.2E-5	IPR001878
SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	196	227	7.15E-8	IPR036875
SUPERFAMILY	SSF56672	DNA/RNA polymerases	389	568	1.65E-7	IPR043502
Gene3D	G3DSA:4.10.60.10	-	173	237	1.2E-5	-
SMART	SM00343	c2hcfinal6	206	222	2.1E-4	IPR001878
ProSiteProfiles	PS50158	Zinc finger CCHC-type profile.	207	222	9.932926	IPR001878
MobiDBLite	mobidb-lite	consensus disorder prediction	298	316	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	156	197	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	169	195	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	296	326	-	-

Gene Ontology

Molecular Function:

Best hit

Source	Best Hit ID	Description
RefSeq	XP_040245987.1	uncharacterized protein LOC120964960 [Aegilops tauschii subsp. strangulata]
Swiss-Prot	P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
TrEMBL	Q2QV75	Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g13780 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Lolium multiflorum	64	gene-QYE76_002052, gene-QYE76_003543, gene-QYE76_004726 ... gene-QYE76_006175, gene-QYE76_006719, gene-QYE76_009057, gene-QYE76_010799, gene-QYE76_011556, gene-QYE76_011818, gene-QYE76_012294, gene-QYE76_014773, gene-QYE76_014872, gene-QYE76_015580, gene-QYE76_016249, gene-QYE76_021805, gene-QYE76_021846, gene-QYE76_022185, gene-QYE76_022204, gene-QYE76_027276, gene-QYE76_027565, gene-QYE76_029265, gene-QYE76_029526, gene-QYE76_029916, gene-QYE76_029962, gene-QYE76_030323, gene-QYE76_030324, gene-QYE76_030455, gene-QYE76_031019, gene-QYE76_031708, gene-QYE76_031908, gene-QYE76_032572, gene-QYE76_034782, gene-QYE76_036490, gene-QYE76_036989, gene-QYE76_037826, gene-QYE76_039240, gene-QYE76_039685, gene-QYE76_043780, gene-QYE76_045993, gene-QYE76_046942, gene-QYE76_048980, gene-QYE76_050196, gene-QYE76_051171, gene-QYE76_053874, gene-QYE76_054023, gene-QYE76_054858, gene-QYE76_058568, gene-QYE76_059121, gene-QYE76_059323, gene-QYE76_061610, gene-QYE76_062152, gene-QYE76_063804, gene-QYE76_063805, gene-QYE76_064737, gene-QYE76_064835, gene-QYE76_066506, gene-QYE76_067586, gene-QYE76_068062, gene-QYE76_068188, gene-QYE76_068845, gene-QYE76_069151, gene-QYE76_069485, gene-QYE76_069893, gene-QYE76_071046