Basic Information
Locus ID:
gene-QYE76_063625
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 139170700 | 139183625 | - | gene-QYE76_063625 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 107,441.70 Da | 38.85 | 82.48 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 814 | 907 | 1.08437E-16 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 175 | 267 | 2.5E-8 | IPR005162 |
| SUPERFAMILY | SSF50630 | Acid proteases | 811 | 915 | 7.88E-8 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 793 | 927 | 4.0E-24 | IPR021109 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_045089081.1 | uncharacterized protein LOC123497118 [Aegilops tauschii subsp. strangulata] | 0 |
| TrEMBL | A0A533HS20 | Retrotransposon gag domain-containing protein (Fragment) OS=Gemella sp. OX=1966354 GN=DI638_10665 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 35 | gene-QYE76_002238, gene-QYE76_002580, gene-QYE76_006006 ... |