Basic Information
Locus ID:
gene-QYE76_063238
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Zinc knuckle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 125213446 | 125218047 | + | gene-QYE76_063238 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 82,336.44 Da | 63.74 | 50.84 | -0.91 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16620 | vRING-HC-C4C4_RBBP6 | 264 | 305 | 3.10761E-13 | - |
| Pfam | PF08783 | DWNN domain | 4 | 82 | 1.6E-22 | IPR014891 |
| Pfam | PF13696 | Zinc knuckle | 171 | 190 | 4.9E-8 | IPR025829 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 170 | 217 | 2.97E-7 | IPR036875 |
| SUPERFAMILY | SSF57850 | RING/U-box | 257 | 328 | 2.04E-11 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 86 | 6.8E-22 | - |
| Gene3D | G3DSA:4.10.60.10 | - | 196 | 239 | 3.5E-10 | - |
| Gene3D | G3DSA:4.10.60.10 | - | 168 | 195 | 1.2E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 249 | 339 | 1.1E-11 | IPR013083 |
| SMART | SM01180 | DWNN_2 | 4 | 83 | 2.1E-35 | IPR014891 |
| SMART | SM00343 | c2hcfinal6 | 175 | 191 | 0.06 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 201 | 217 | 0.076 | IPR001878 |
| ProSiteProfiles | PS51282 | DWNN domain profile. | 4 | 83 | 18.970089 | IPR014891 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 176 | 191 | 8.812096 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 202 | 216 | 8.581337 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 560 | 747 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 365 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 566 | 747 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 412 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 369 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47430.4 | - | 0 |
| RefSeq | XP_047092082.1 | E3 ubiquitin ligase PQT3-like isoform X1 [Lolium rigidum] | 0 |
| B9DFV2 | E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1 | 0 | |
| TrEMBL | F2EK12 | Predicted protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology