Basic Information
Locus ID:
gene-QYE76_062966
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 114880864 | 114885479 | - | gene-QYE76_062966 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 62,126.29 Da | 48.46 | 78.05 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 161 | 213 | 4.27138E-24 | - |
| Pfam | PF12315 | Protein DA1 | 310 | 549 | 1.4E-94 | IPR022087 |
| Pfam | PF00412 | LIM domain | 161 | 215 | 6.9E-9 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 187 | 242 | 5.98E-9 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 155 | 186 | 4.68E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 151 | 219 | 4.4E-15 | - |
| SMART | SM00726 | uim | 79 | 98 | 0.13 | IPR003903 |
| SMART | SM00726 | uim | 110 | 129 | 0.049 | IPR003903 |
| SMART | SM00132 | lim_4 | 160 | 212 | 3.9E-11 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 110 | 129 | 9.592854 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 159 | 219 | 12.087999 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 79 | 98 | 8.557899 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 161 | 195 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 481 | 501 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_051179390.1 | protein DA1-related 1-like isoform X1 [Lolium perenne] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | M0VV55 | Uncharacterized protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology