Basic Information
Locus ID:
gene-QYE76_062937
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Protein of unknown function (DUF674)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 113756441 | 113758559 | + | gene-QYE76_062937 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.85 | 36,870.32 Da | 39.45 | 84.50 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 245 | 312 | 1.1E-12 | IPR000626 |
| Pfam | PF05056 | Protein of unknown function (DUF674) | 149 | 221 | 5.2E-6 | IPR007750 |
| Pfam | PF05056 | Protein of unknown function (DUF674) | 3 | 73 | 1.5E-13 | IPR007750 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 241 | 318 | 1.06E-16 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 236 | 328 | 1.4E-19 | - |
| SMART | SM00213 | ubq_7 | 243 | 315 | 4.5E-14 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 243 | 319 | 14.01168 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 296 | 317 | 1.5E-8 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 253 | 273 | 1.5E-8 | IPR019956 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05050.4 | ubiquitin 11. polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14. Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene. | 0 |
| RefSeq | XP_047085493.1 | uncharacterized protein LOC124696869 [Lolium rigidum] | 0 |
| P69310 | Ubiquitin OS=Avena sativa OX=4498 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6JR80 | Ubiquitin-like domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | AH01.5106 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3BG0296450 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0075250.1, HORVU.MOREX.r3.4HG0413000.2 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_062937, gene-QYE76_071335, gene-QYE76_071336 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G502800 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0100642, Pt_Chr0100660, Pt_Chr0100663 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr01G038660 |
| Poaceae | Thinopyrum elongatum | 5 | Tel1E01G446600, Tel4E01G571500, Tel4E01G571600 ... |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4BG058660, gene_TRIDC4BG058770 ... |
| Poaceae | Triticum aestivum | 19 | TraesCS1A02G273800.1, TraesCS1B02G283500.1 ... |