Basic Information
Locus ID:
gene-QYE76_062914
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 112865792 | 112868238 | + | gene-QYE76_062914 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.94 | 73,931.03 Da | 46.73 | 93.52 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09272 | RNase_HI_RT_Ty1 | 341 | 420 | 1.82407E-38 | - |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 11 | 253 | 3.9E-67 | IPR013103 |
| Pfam | PF00069 | Protein kinase domain | 432 | 647 | 3.2E-44 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 431 | 652 | 1.07E-55 | IPR011009 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 10 | 421 | 2.0E-31 | IPR043502 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 422 | 670 | 5.0E-55 | - |
| SMART | SM00220 | serkin_6 | 388 | 647 | 6.6E-45 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 373 | 647 | 34.944206 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 503 | 515 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23160.2 | - | 0 |
| RefSeq | XP_035816648.1 | uncharacterized protein LOC115072894 isoform X1 [Zea mays] | 0 |
| Q9ZT94 | Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1 | 0 | |
| TrEMBL | A0A2I8BIG3 | Orf490 OS=Oryza coarctata OX=77588 GN=orf490 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G30549 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_037225, gene-QYE76_062914 |