Basic Information
Locus ID:
gene-QYE76_062624
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 102541138 | 102545515 | + | gene-QYE76_062624 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.77 | 83,150.43 Da | 41.46 | 92.80 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09272 | RNase_HI_RT_Ty1 | 697 | 768 | 5.35462E-30 | - |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 418 | 654 | 1.6E-64 | IPR013103 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 417 | 765 | 1.07E-27 | IPR043502 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 378 | 400 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 366 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23160.2 | - | 0 |
| RefSeq | YP_009241997.1 | hypothetical protein (mitochondrion) [Oryza minuta] | 0 |
| Q9ZT94 | Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1 | 0 | |
| TrEMBL | C7J5P9 | Os08g0544300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0544300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 30 | gene-QYE76_000020, gene-QYE76_000848, gene-QYE76_001346 ... |