Basic Information
Locus ID:
gene-QYE76_062578
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 100529488 | 100534526 | - | gene-QYE76_062578 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 98,583.80 Da | 44.86 | 84.54 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 754 | 896 | 1.2E-39 | IPR013103 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 472 | 576 | 2.1E-8 | - |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 758 | 881 | 8.45E-6 | IPR043502 |
| SUPERFAMILY | SSF81383 | F-box domain | 20 | 67 | 2.29E-6 | IPR036047 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23160.2 | - | 0 |
| RefSeq | XP_051230480.1 | uncharacterized protein LOC127348518 [Lolium perenne] | 0 |
| P10978 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453EH19 | Retrotran_gag_3 domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 22 | AH01.1249, AH01.1251, AH01.1252, AH01.2719, AH01.2720 ... |
| Poaceae | Eleusine coracana subsp. coracana | 7 | gene-QOZ80_2AG0118890, gene-QOZ80_2BG0164750 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.7HG0751830.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 22 | gene-QYE76_001111, gene-QYE76_001112, gene-QYE76_001114 ... |
| Poaceae | Paspalum vaginatum | 11 | gene-BS78_01G071300, gene-BS78_01G145300, gene-BS78_K058100 ... |
| Poaceae | Puccinellia tenuiflora | 10 | Pt_Chr0100012, Pt_Chr0100530, Pt_Chr0207346, Pt_Chr0500031 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr12G027540 |
| Poaceae | Triticum aestivum | 7 | TraesCS4A02G249900.1.cds1, TraesCS4B02G064800.1.cds1 ... |